Yes. Three casinos gave me trouble for setting, using a controlled throw and winning. NYNY told me to leave. MGM said I couldn't throw the dice anymore. But Bellagio management later apologized for the trouble I had there with two separate crews.
There is no law against card counting but casinos have a right to decide who they will allow to gamble. They can also decide who can play craps or even video poker. That right has nothing to do with the NGC's ruling on how the game is played.